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-------- Original Message --------
Subject: IVPHC: Novel A/H1N1 includes H5N1 Genetic Components - Cytokine Storm [Edited]
Date: Wed, 06 May 2009 00:24:01 -0700
From: "Stephen M. Apatow" <s.m.apatow@pathobiologics.org>
To: ivphc.wg@pathobiologics.org

6 May 2009

Contact: Stephen M. Apatow
Founder, Director of Research & Development
Humanitarian Resource Institute (UN:NGO:DESA)
Humanitarian University Consortium Graduate Studies
Center for Medicine, Veterinary Medicine & Law
Phone: 203-668-0282
Email: s.m.apatow@humanitarian.net
Internet: www.humanitarian.net

Pathobiologics International
Internet: www.pathobiologics.org


IDIN: Pathobiologics International: Biodefense Threat Analysis & Communication Center
Subject: Pandemic Influenza: Contingency Planning Discussion

Dear Colleagues:

The swine flu outbreak that began in Mexico and continues to spread around the globe may be particularly dangerous for young, otherwise healthy adults because it contains genetic components of the H5N1 avian influenza virus, which can induce a "cytokine storm," in which a patient's hyper-activated immune system causes potentially fatal damage to the lungs. --  Does New Swine Flu Virus Kill By Causing A 'Cytokine Storm'?: ScienceDaily, 6 May 2009.

In the context of Phylogenetic analysis and reassortment history of Human/Swine H1N1 (tree.bio.ed.ac.uk) and specific H5N1 determinants in the lineage of  Novel A/H5N1, I would like to direct your attention to Human/Swine H1N1: Phylogenetics (all segments) with additional swine isolates (Gavin Smith, Vijaykrishna Dhanasekaran, Justin Bahl 02 May 2009):

PB1 gene – HKU 02 May 2009 (PDF)

Avian Gene Pool
--  AF144301 Goose/Guangdong/1/1996 (H5N1)

PA gene – HKU 02 May 2009 (PDF)

Avian Gene Pool
--  AF144302 Goose/Guangdong/1/1996 (H5N1)

M gene – HKU 02 May 2009 (PDF)

Eurasian avian gene pool
-- SCk/HK/SF189/2001 H5N1
-- AF144306 Gs/GD/1/1996 H5N1
-- Gs/GD/1/1996 H5N1
-- DQ997259 Sw/Guangxi/wz/2004 H5N1


Evolution of H5N1 into a human to human pandemic strain (Novel A/H1N1), is now realized.  The cytokine storm is the variable that makes the present pandemic strain a serious concern.

Because proinflammatory cytokines are markedly elevated during H5N1 influenza virus infection, the “cytokine storm” is hypothesized to be the main cause of mortality. Here, we demonstrate that mice deficient in the hallmark inflammatory cytokines TNF-α, IL-6, or CC chemokine ligand 2 succumb to infection with A/Vietnam/1203/04 (H5N1) virus, as do wild-type mice treated with glucocorticoids for suppression of cytokines. Because cytokine inhibition does not protect against death, therapies that target the virus rather than cytokines may be preferable. -- Inhibition of the cytokine response does not protect against lethal H5N1 influenza infection: National Academy of Sciences, 5 June 2007.

Interactive Figure. Proposed Mechanism of the Cytokine Storm Evoked by Influenzavirus. Supplement to: Osterholm MT. Preparing for the Next Pandemic. N Engl J Med 2005;352(18):1839-42.

Now as the virus continues to spread throughout the United States and across the globe, we should be shortly gaining a grasp of the clinical consequences of spread with a 1-7 day incubation period.


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